Annotating nonspecific SAGE tags with microarray data

cDNA Microarray Data Normalization

Interpreting Microarray Expression Data Using Text Annotating the Genes

12 Microarray expression data is being generated by the gigabyte all over the world with 13 undoubted exponential increases to come. Annotated genomic data is also rapidly 14 pouring into public databases. Our goal is to develop automated ways of combining 15 these two sources of information to produce insight into the operation of cells under 16 various conditions. Our approach is to use machi...

Transcriptome annotation using tandem SAGE tags

Analysis of several million expressed gene signatures (tags) revealed an increasing number of different sequences, largely exceeding that of annotated genes in mammalian genomes. Serial analysis of gene expression (SAGE) can reveal new Poly(A) RNAs transcribed from previously unrecognized chromosomal regions. However, conventional SAGE tags are too short to identify unambiguously unique sites i...

Types of Tags for Annotating Academic Blogs

Academic blog sites are popular academic information exchange platforms, and they have been widely used in recent years. Blogs in those sites are often annotated with tags, and the tags can help to describe, organize and retrieve these blogs. However, it is still unknown what types of tags are frequently adopted for annotating academic blogs. In this poster, we present survey results for detect...

Combining SAGE tags to predict genomic transcribed regions

Analysis of several million expressed gene signatures (tags) revealed an increasing number of different sequences, largely exceeding that of annotated genes in mammalian genomes. Serial Analysis of Gene Expression (SAGE) can reveal new RNAs transcribed from previously unrecognized genomic regions. However, conventional SAGE tags are too short to identify unambiguously unique sites in large geno...